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生物信息学中的算法/会议录 Algorithms in bioinformatics

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作者: Philipp Bücher ,Bernard M.E. Moret 著

出 版 社: 湖北辞书出版社

出版时间: 2006-12-1字数:版次: 1页数: 402印刷时间: 2006/12/01开本:印次:纸张: 胶版纸I S B N : 9783540395836包装: 平装编辑推荐

LNBI is devoted to the publication of state-of-the-art research results in bio-informatics and computational biology, at a high level and in both printed and electronic versions - making use of the well-established LNCS publication machinery. As with the LNCS mother series, refereed proceedings and post- proceedings are at the core of LNBI, however, similar to the color cover sub- lines in LNCS, tutorials and state-of-the-art surveys are also invited for LNBI. Among the topics covered are:

Genomics;Molecular sequence analysis;Recognition of genes and regulatory elements;Molecular evolution;Protein structure;Gene expression;Gene networks;Combinatorial libraries and drug design;Computational proteomics.

内容简介

This book constitutes the refereed proceedings of the 6th International Workshop on Algorithms in Bioinformatics, WABI 2006, held in Zurich, Switzerland in September 2006 in the course of the ALGO 2006 conference meetings.

The 36 revised full papers presented were carefully reviewed and selected from 100 submissions. All current issues of algorithms in bioinformatics are addressed, ranging from mathematical tools to experimental studies of approximation algorithms and reports on significant computational analyses. Numerous biological problems are dealt with, including genetic mapping, sequence alignment and sequence analysis, phylogeny, comparative genomics, and protein structure. For the first time also machine-learning approaches along with combinatorial optimization are covered.

目录

Measures of Codon Bias in Yeast, the tRNA Pairing Index and Possible DNA Repair Mechanisms

Decomposing Metabolomic Isotope Patterns

A Method to Design Standard HMMs with Desired Length Distribution

for Biological Sequence Analysis

Efficient Model-Based Clustering for LC-MS Data

A Bayesian Algorithm for Reconstructing Two-Component Signaling Networks

Linear-Time Haplotype Inference on Pedigrees Without Recombinations

Phylogenetic Network Inferences Through Efficient Haplotyping

Beaches of Islands of Tractability: Algorithms for Parsimony and Minimum Perfect Phylogeny Haplotyping Problems

On the Complexity of SNP Block Partitioning Under the Perfect Phylogeny Model

How Many Transcripts Does It Take to Reconstruct the Splice Graph?

Multiple Structure Alignment and Consensus Identification for Proteins

Procrastination Leads to Efficient Filtration for Local Multiple Alignment

Controlling Size When Aligning Multiple Genomic Sequences with Duplications

Reducing Distortion in Phylogenetic Networks

Imputing Supertrees and Supernetworks from Quartets

A Unifying View of Genome Rearrangements

Efficient Sampling of Transpositions and Inverted Transpositions for Bayesian MCMC

Alignment with Non-overlapping Inversions in o(na)-Time

Accelerating Motif Discovery: Motif Matching on Parallel Hardware

Segmenting Motifs in Protein-Protein Interface Surfaces

Protein Side-Chain Placement Through MAP Estimation and Problem-Size Reduction

On the Complexity of the Crossing Contact Map Pattern Matching Problem

……

Author Index

 
 
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